Quantitative Proteomic Analysis Reveals Important Roles of the Acetylation of ER-Resident Molecular Chaperones for Conidiation in Fusarium oxysporum

Fusarium oxysporum is one of the most abundant and diverse fungal species found in soils and includes nonpathogenic, endophytic, and pathogenic strains affecting a broad range of plant and animal hosts. Conidiation is the major mode of reproduction in many filamentous fungi, but the regulation of this process is largely unknown. Lysine acetylation (Kac) is an evolutionarily conserved and widespread posttranslational modification implicated in regulation of multiple metabolic processes. A total of 62 upregulated and 49 downregulated Kac proteins were identified in sporulating mycelia versus nonsporulating mycelia of F. oxysporum. Diverse cellular proteins, including glycolytic enzymes, ribosomal proteins, and endoplasmic reticulum–resident molecular chaperones, were differentially acetylated in the sporulation process. Altered Kac levels of three endoplasmic reticulum–resident molecular chaperones, PDI^K70, HSP70^K604, and HSP40^K32 were identified that with important roles in F. oxysporum conidiation. Specifically, K70 acetylation (K70ac) was found to be crucial for maintaining stability and activity of protein disulphide isomerase and the K604ac of HSP70 and K32ac of HSP40 suppressed the detoxification ability of these heat shock proteins, resulting in higher levels of protein aggregation. During conidial formation, an increased level of PDI^K70ac and decreased levels of HSP70^K604ac and HSP40^K32ac contributed to the proper processing of unfolded proteins and eliminated protein aggregation, which is beneficial for dramatic cell biological remodeling during conidiation in F. oxysporum.     

Diagnostic quality assessment of compressed SENSE accelerated magnetic resonance images in standard neuroimaging protocol: Choosing the right acceleration

PurposeTo investigate the impact of compressed sensing – sensitivity encoding (CS-SENSE) acceleration factor on the diagnostic quality of magnetic resonance images within standard brain protocol.MethodsThree routine clinical neuroimaging sequences were chosen for this study due to their long acquisition time: T2-weighted turbo spin echo (TSE), fluid - attenuated inversion recovery (FLAIR), and 3D time of flight (TOF). Fully sampled reference scans and multiple prospectively 2x to 5x undersampled CS scans were acquired. Retrospectively, undersampled scans were compared to fully sampled scans and visually assessed for image quality and diagnostic quality by three independent radiologists.ResultsImages obtained with CS-SENSE accelerated acquisition were of diagnostically acceptable quality at up to 3x acceleration for T2 TSE (average qualitative score 3.53 on a 4-point scale, with the acquisition time reduction of 64%), up to 2x for FLAIR (average qualitative score 3.27, with the acquisition time reduction of 43%) and 4x acceleration for 3D TOF sequence (average qualitative score 3.13, with the acquisition time reduction of 73%). There were no substantial differences between the readers’ diagnostic quality scores (p > 0.05).ConclusionsCS-SENSE accelerated T2 TSE, FLAIR, and 3D TOF sequences of the brain show image quality similar to that of conventional acquisitions with reduced acquisition time. CS-SENSE can moderately reduce scan time, providing many benefits without losing the image quality.     

Evaluation of the water quality of future tributaries to the planned Dobczyce reservoir (Poland) using macroinvertebrates

The bottom fauna of 5 tributaries of the planned Dobczyce reservoir and the River Raba below the dam was investigated in the preimpoundment period (1983–84). The abundance of macrofauna varied between 46 taxa (Wolnica stream) and 66 taxa (Brzezówka stream). Each station showed individual taxa composition except for the RABA-u and RABA-d (84% similarity). On the basis of 7 different biological indices the stations were divided into 3 categories: unpolluted (Brzezówka), slightly polluted (Bulinka, Trzemésnia and both Raba stations), and moderately polluted (Wolnica). Most sensitive to chemical pollution was the BIOTIC-index. The combination of environmental variables was used to predict biological indices. The most significant relationship (P < 0.01, R ² = 0.71) was found between the BIOTIC-index and physico-chemical factors. Some problems in the application of indices (sampling, indicator organisms and interpretation of the results) are discussed and local adaptations of methods used are recommended.     

Hand-held lactate analyzer as a tool for the real-time measurement of physical fatigue before slaughter and pork quality prediction

The objectives of this study were to assess the relationship between blood lactate variation measured at the plant, and pork quality variation on a large sample size and under commercial preslaughter handling conditions. A total of 600 pigs were randomly chosen on arrival at a commercial slaughter plant and blood samples taken from the ear vein at unloading (UN), after lairage (LA), in the restrainer (RE; before stunning) and at exsanguination (EX) were analysed for lactate content using a Lactate Scout Analyzer (LSA). In order to have a large range of measures, pigs were distributed into two groups; one kept in lairage overnight (G1) and the other for 2 to 3 h (G2) before slaughter. Meat quality was assessed in the Longissimus thoracis (LT), Semimembranosus (SM) and Adductor (AD) muscles by measuring the pH 30 min postmortem (pH1) and at 24 h postmortem (pHu), the colour and the drip loss. Blood lactate levels did not differ between G1 and G2 (P>0.05). A reduced muscle lactate and glucose contents (P=0.02 and P=0.004, respectively) resulting in a lower (P<0.001) glycolytic potential (GP) was observed in the LT muscle of G1 pigs when compared with G2 loins. In the LT muscle of G1 pigs, the lower GP resulted in an increased pHu (r=−0.67; P<0.001), decreased drip loss (r=0.57; P<0.001) and darker colour (r=0.50; P<0.001) compared with G2. In both G1 and G2 pigs, the lower GP was correlated to higher pHu value in the SM and AD muscles (r=−0.73; P<0.001). The greatest correlation was observed in G2 between blood lactate levels at LA and pHu value of the SM and AD muscles (r=0.46 and r=0.44, respectively; P<0.001 for both muscles). The second greatest correlation was found between blood lactate levels at EX and pH1 value in the SM muscle in both groups (r=−0.37 and r=−0.41, respectively; P<0.001 for both groups). Based on the results of this study, it appears that blood lactate levels, as measured by the LSA, reliably reflect the physiological response of pigs to perimortem stress and may help explain the variation in pork quality.     

Standardizing Immunohistochemistry: A New Reference Control for Detecting Staining Problems

A new standardized immunohistochemistry (IHC) control for breast cancer testing comprises formalin-fixed human epidermal growth factor receptor 2, estrogen receptor, or progesterone receptor peptide antigens covalently attached to 8-µm glass beads. The antigen-coated beads are suspended in a liquid matrix that hardens upon pipetting onto a glass microscope slide. The antigen-coated beads remain in place through deparaffinization, antigen retrieval, and immunostaining. The intensity of the beads’ stain provides feedback regarding the efficacy of both antigen retrieval and immunostaining. As a first report, we tested the sensitivity and specificity of the new IHC controls (“IHControls”). To evaluate sensitivity, various staining problems were simulated. IHControls detected primary and secondary reagent degradation similarly to tissue controls. This first group of IHControls behaved similarly to tissue controls expressing high concentrations of the antigen. The IHControls were also able to detect aberrations in antigen retrieval, as simulated by sub-optimal times or temperatures. Specificity testing revealed that each antigen-coated bead was specific for its cognate IHC test antibody. The data support the conclusion that, like tissue controls, IHControls are capable of verifying the analytic components of an immunohistochemical stain. Unlike tissue controls, IHControls are prepared in large bulk lots, fostering day-to-day reproducibility that can be standardized across laboratories.     

厦门地区夏季播种的松花型花椰菜营养品质评价

以厦门地区夏季播种的抗热松花型台湾花椰菜Brassica oleracea var. botrytis品种为材料，比较各品种生物学性状、营养成分、矿质元素、能源、植物功能性指标，并以低能高营养的消费原则，采用平均隶属函数值对品种进行评价。结果表明，平均隶属函数值依次为‘雪松’(4.805) >‘香雪’(3.282) >‘雪丽’(2.279) >‘庆农S90’(1.037)。结合生育期考虑，‘雪松’为夏季较适合在厦门地区推广的松花型花椰菜抗热新品种。     

Regional ecological risk assessment using a relative risk model: A case study of the Darwin Harbour,Darwin, Australia

There are many proposed and ongoing commercial, industrial, and residential developments within the Darwin Harbour catchment in Northern Australia, to accommodate the projected population growth over the next 20 years. Hence, it is necessary to ensure the balance between these developments and ecosystem conservation. We evaluated ecological risk for the Darwin Harbour using a relative risk model (RRM). The catchment was divided into 22 risk regions based on small catchment boundaries and their homogeneity. Through the RRM, we ranked and summed the stressors and habitats within regions. The interaction between stressors and habitats were modeled through exposure and effect filters. The ecological assessment endpoints were maintenance of the mangrove health and the maintenance of water quality. The risk regions—Myrmidon Creek, Blackmore River, Bleesers Creek, and Elizabeth River—showed the highest total relative risk for ecological assets. These risk regions had a high percentage cover of industrial, commercial, and residential areas; diffuse entry points; and climate change effects. Creek A, Sandy Creek, West Arm, and Pioneer Creek were the risk regions with lowest total relative risk scores. The RRM is a robust application that is suitable for a large geographic area where multiple stressors are of concern.